Clinical Genetics Resources
Clinical Resources
Clinical Management & Guidelines
- Acute Management
- British Inherited Metabolic Disorder Group: Emergency Guides (BIMDG)
- Genome to Treatment Launch Pad (BeginNGS and GTRx)
- Maladies Héréditaires du Métabolisme (Hereditary Metabolic Diseases)
- Management of Hyperammonaemia with Dialysis (paper)
- Inborn Errors of Metabolism Knowledgebase (IEMbase)
- New England Consortium of Metabolic Programs: Acute Illness
- British Inherited Metabolic Disorder Group: Emergency Guides (BIMDG)
- Acute & Chronic Management
- Chronic Management
- ACMG Practice Guidelines
- Clinical Genomic Database (CGD)
- ClinicalTrials.gov
- Cochrane Reviews
- Dietary Management of MSUD (paper)
- Find a Genetic Clinic (ACMG)
- GeneReviews
- Genomic Results E-Booklet (GenCOUNSEL)
- Medical Genetics Summaries
- N-lorem
- National Coordinating Center for the Regional Genetics Networks (NCC)
- Rx Genes
- Treatable Intellectual Disability Endeavor in BC (TIDE BC)
- Unique
- United Porphyrias Association: Testing and Diagnosis
- ZebraMD
- ACMG Practice Guidelines
- Newborn Screen
Dysmorphology
Gene Panel Tools
Genetic Databases
- Condition-Specific Databases
- Albinism
- Alzheimer’s Disease Variant Portal (ADVP)
- CardioDB
- Cardio Classifier
- Clinical and Functional Translation of CFTR (CFTR2)
- Deafness Variation Database (DVD)
- Developmental Brain Disorder Gene Database
- Gene4HL
- Gene4MND
- Gene4PD
- Genetic of Intellectual Disability and Autism Spectrum Disorders (GenIDA)
- HbVar
- Hearing Loss
- NIAGADS Alzheimer’s Genomics Database
- Pompe disease GAA variant database
- Priority index
- SFARI GENE
- Type 2 Diabetes Knowledge Portal
- Usher Syndrome Missense Analysis
- VariCarta
- Albinism
- Gene-Specific Databases
- Pharmacogenomic Databases
- Population-Specific Databases
Genome Browsers
- Awesome Genome Visualization
- Database of Genomic Variants (DGV)
- Ensembl
- Genome Data Viewer (GDV)
- HiGlass
- Integrative Genomics Viewer (IGV)
- JBrowse
- 3D Genome Browser
- UCSC genome browser
- Variation Viewer
- Zoonomia Project
Genotype to Phenotype1
Allele Frequency
Clinical Knowledge
- Gene & Variant Impact Databases
- Matchmaker Exchanges
- Disease-Gene-Phenotype Relationship Databases
- ClinGen Gene-Disease Validity
- Database of Genotypes and Phenotypes (dbGaP)
- DisGeNET
- GeDiPNet
- Gene Curation Coalition Database (GenCC DB)
- Gene-Similarity from Continuous Traits (Gene-SCOUT)
- Genotype to Mendelian Phenotype (Geno2MP)
- Gene2Phenotype (G2P)
- GPCards
- HuGE
- MalaCards
- MILTON Browser
- Monarch Initiative
- Phenotype-Genotype Integrator (PheGenI)
Functional Knowledge
- Genomic Regulation
- Interactions, Pathways & Similarities
- Linkage to (Causal) Variant
- Literature Tools
- Model Organism
- Protein Function and Structure
Metabolic Resources
General
Phenotype to Genotype
- Automatic Mendelian Literature Evaluation (AMELIE)
- CADA
- Genetic Disease Diagnosis based on Phenotypes (GDDP)
- GeneNetwork Assisted Diagnostic Optimization (GADO)
- Phen2Gene
- PhenoApt
- PhenoExam
- Phenomizer
- Phenotypr
- PubCaseFinder
- SimPheny.iobio
- VarElect
- Variant Interpretation using Biomedical literature Evidence (VIBE)
Rare Disease Catalogs & Resources
- Patient & Professional Networks
- Rare Disease Knowledge Bases
Recommendations for clinical interpretation of variants found in non-coding regions of the genome↩︎
An expanded phenotype centric benchmark of variant prioritization tools↩︎
A comparison on predicting functional impact of genomic variants↩︎
Calibration of computational tools for missense variant pathogenicity classification and ClinGen recommendations for PP3/BP4 criteria↩︎
Application Of The ACMG/AMP Framework To Capture Evidence Relevant To Predicted And Observed Impact On Splicing: Recommendations From The ClinGen SVI Splicing Subgroup↩︎
Benchmarking splice variant prediction algorithms using massively parallel splicing assays↩︎
Questions? Contributions?
bmuchmor@med.umich.edu